Stuff i've come across coming from a MK3:
Balance shaft - mine seized up
If the Thermostat fails its a long job to replace
ABS pump can fail with ESP light stuck on
AC pump and AC pressure switch fail
AC condenser probably wants changing due to age
Door locks fail (a lot) i'll be replacing the passenger side front and both rears this weekend

Seems like pretty much every bolt in one time use, including interior fixings.
Headliner and door cards sag
The red speedo display may be dimmer on one side or lose pixels in summer.
Rear control arm bolts will/are seized
Boost hoses properly need seals replacing if dripping oil
Yellowing of headlights
Bonnet lock can seize open or closed
CV boots don't seem to last too long
Oil dip stick needs to be changed from orange to the newer yellow design so the plastic parts dont fail into the sump
Steering rack can fail (clunk at low speeds)
Steering columns can fail (inch of play in steering wheel, most noticeable on the motor way)
VW airbag logo can show micro cracks
Rear passenger vents, the knob to change air flow fall off
Dog mount bushing needs an expensive tool to replace